miRBase entry: dre-mir-199-1

Stem-loop dre-mir-199-1


Accession
MI0001373
Description
Danio rerio dre-mir-199-1 precursor miRNA mir-199
Gene
family?
RF00144; mir-199

Literature search
10 open access papers mention dre-mir-199-1
(17 sentences)

Sequence

66460 reads, 5531 reads per million, 11 experiments
uccugcuccgucauCCCAGUGUUCAGACUACCUGUUCaggaucauacuggugUACAGUAGUCUGCACAUUGGUUagacugugcaugg
.(((((.(.(((...(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...))).).))).))

Structure
u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  c
 gg acg g cag   GGUUACA GUCUGAUG ACA   gguc  a
-  u   u u   aUU       C        -   Ugu    au 


Annotation confidence High
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Genome context
chr20: 14875460-14875546 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-199-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-199-5p

Accession MIMAT0001277
Description Danio rerio dre-miR-199-5p mature miRNA
Sequence 15 - CCCAGUGUUCAGACUACCUGUUC - 37
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-199-3p

Accession MIMAT0003155
Description Danio rerio dre-miR-199-3p mature miRNA
Sequence 53 - UACAGUAGUCUGCACAUUGGUU - 74
Evidence experimental
array [3], in-situ [3]
Database links

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  3. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311