miRBase entry: dre-mir-216a

Stem-loop dre-mir-216a


Accession
MI0001382
Description
Danio rerio dre-mir-216a precursor miRNA mir-216
Gene
family?
RF00654; mir-216


Sequence

78 reads, 14 reads per million, 10 experiments
gcugauuuuuggcaUAAUCUCAGCUGGCAACUGUGAguaguguuuucaucccucucacaggcgcugcugggguucugucacacacagca
((((.....(((((.(((((((((.(((..(((((((..(((....)))....)))))))..)))))))))))).)))))....)))).

Structure
-    auuuu     U         U   AA       --ua   u 
 gcug     uggca AAUCUCAGC GGC  CUGUGAg    gug u
 ||||     ||||| ||||||||| |||  |||||||    |||  
 cgac     acugu uuggggucg ucg  gacacuc    uac u
a    -acac     c         -   cg       uccc   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr22: 28779949-28780037 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-216a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-216a

Accession MIMAT0001284
Description Danio rerio dre-miR-216a mature miRNA
Sequence 15 - UAAUCUCAGCUGGCAACUGUGA - 36
Evidence experimental
PCR [1], cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293