miRBase entry: dre-mir-30b

Stem-loop dre-mir-30b


Accession
MI0001941
Description
Danio rerio dre-mir-30b precursor miRNA

Literature search
11 open access papers mention dre-mir-30b
(118 sentences)

Sequence

7303 reads, 528 reads per million, 11 experiments
uuccaguguagucgcUGUAAACAUCCUACACUCAGCUgugagcugcagacgaggcugggcggaggguguuugcugugacugucuggag
.(((((..(((((((.(((((((((((.(.(((((((.((.........)).))))))).).))))))))))).))))))).))))).

Structure
u     ug       U           A A       g  agc 
 uccag  uagucgc GUAAACAUCCU C CUCAGCU ug   u
 |||||  ||||||| ||||||||||| | ||||||| ||   g
 agguc  gucagug cguuuguggga g gggucgg gc   c
g     -u       u           g c       a  aga 


Annotation confidence High
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Genome context
chr16: 25341724-25341811 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-30b

Accession MIMAT0001804
Description Danio rerio dre-miR-30b mature miRNA
Sequence 16 - UGUAAACAUCCUACACUCAGCU - 37
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293