miRBase entry: dre-mir-430a-12

Stem-loop dre-mir-430a-12


Accession
MI0002121
Description
Danio rerio dre-mir-430a-12 precursor miRNA miR-430
Gene
family?
RF01413; miR-430

Literature search
38 open access papers mention dre-mir-430a-12
(204 sentences)

Sequence

2381931 reads, 78938 reads per million, 5 experiments
gucucuaucgguACCCUCACAAAAGCACUGACUuugaugcuguauuuggUAAGUGCUAUUUGUUGGGGUAGuuucaagugac
(((.((...(.((((((.(((((((((((.(((..((((...)))).))).)))))).))))).)))))).)....)).)))

Structure
   u  -auc g      C     -      G   uu    c 
guc cu    g uACCCU ACAAA AGCACU ACU  gaug  
||| ||    | |||||| ||||| |||||| |||  |||| u
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uuau  
   u  acuu G      U     A      A   -u    g 


Annotation confidence High
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Genome context
chr4: 28695576-28695657 [+]
Clustered miRNAs
43 other miRNAs are < 10 kb from dre-mir-430a-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-430a-3p

Accession MIMAT0001423
Description Danio rerio dre-miR-430a-3p mature miRNA
Sequence 50 - UAAGUGCUAUUUGUUGGGGUAG - 71
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-430a-12-5p

Accession MIMAT0031997
Description Danio rerio dre-miR-430a-12-5p mature miRNA
Sequence 13 - ACCCUCACAAAAGCACUGACU - 33
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15774722
    MicroRNAs regulate brain morphogenesis in zebrafish
    "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
    "Science (2005) 308:833-838