Stem-loop dre-mir-9-2

Accession

MI0001881

Description

Danio rerio dre-mir-9-2 precursor miRNA

Literature search

24 open access papers mention dre-mir-9-2
(219 sentences)

Sequence

41330 reads, 1465 reads per million, 11 experiments

gcucuccucuggugacuuuugcacuuggaggcguguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugugcuggccgucaUAAAGCUAGAUAACCGAAAGUaagagccgcuucuaucagcaacguauggagcauugc
(((((......(((....((((...((((((((.(((.((((.(((((((((((((((.(((((..((....))..))))).))))))))))))))).)))).)))))))))))...))))..)))))))).....

Structure

-----     ccucug   acuu    acu        u   g    C               G     gu  g 
     gcucu      gug    uugc   uggaggcg guu uuaU UUUGGUUAUCUAGCU UAUGA  gu c
     |||||      |||    ||||   |||||||| ||| |||| ||||||||||||||| |||||  ||  
     cgagg      uau    aacg   aucuucgc cga aaUG AAGCCAAUAGAUCGA AUacu  cg u
cguua     ------   --gc    acu        -   g    A               A     gc  g 

Annotation confidence High

Genome context

chr10: 43535960-43536095 [-]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 42 - UCUUUGGUUAUCUAGCUGUAUGA - 64
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-3p

• Accession: MIMAT0003156
• Description: Danio rerio dre-miR-9-3p mature miRNA
• Sequence: 80 - UAAAGCUAGAUAACCGAAAGU - 100
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311