miRBase entry: dre-mir-124-5

Stem-loop dre-mir-124-5


Accession
MI0001970
Description
Danio rerio dre-mir-124-5 precursor miRNA

Literature search
23 open access papers mention dre-mir-124-5
(79 sentences)

Sequence

7206 reads, 504 reads per million, 7 experiments
ggguuuugcucgugcguucuuuuugaguucucgcucugCGUGUUCACAGCGGACCUUGAUuuaauguccauacaauUAAGGCACGCGGUGAAUGCCAAgagaagaaucucuccagcaacgaguuugcgc
(.((...((((((((.........(((((((..((((..((((((((.(((..((((((((............))))))))..))).))))))))..)))).)))).)))....)).))))))..)).)

Structure
 g  uuu      -  guucuuuuu   -    cg    gC        A   GA        uaaug 
g gu   gcucgu gc         gag uucu  cucu  GUGUUCAC GCG  CCUUGAUu     u
| ||   |||||| ||         ||| ||||  ||||  |||||||| |||  ||||||||      
c cg   ugagca cg         cuc aaga  gagA  CGUAAGUG CGC  GGAAUuaa     c
 g  -uu      a  -----accu   u    -a    AC        G   AC        cauac 


Annotation confidence High
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Genome context
chr23: 17783413-17783541 [+]

Database links

Mature dre-miR-124-3p

Accession MIMAT0001819
Description Danio rerio dre-miR-124-3p mature miRNA
Sequence 77 - UAAGGCACGCGGUGAAUGCCAA - 98
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-124-5p

Accession MIMAT0031960
Description Danio rerio dre-miR-124-5p mature miRNA
Sequence 39 - CGUGUUCACAGCGGACCUUGAU - 60
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293