Stem-loop dre-mir-26a-2

Accession

MI0001925

Description

Danio rerio dre-mir-26a-2 precursor miRNA mir-26

Gene
family

RF00244; mir-26

Literature search

10 open access papers mention dre-mir-26a-2
(121 sentences)

Sequence

134740 reads, 8261 reads per million, 11 experiments

guguggacuugagugcuggaagugguuguucccuugUUCAAGUAAUCCAGGAUAGGCUgucuguccuggaggCCUAUUCAUGAUUACUUGCACUagguggcagccguugcccuucauggaacucaugc
.........(((((.((.((((((((((((.(((.((.(((((((((..(((((((((.((......)).)))))))))..))))))))).)).))).)))))))).....))))..)).)))))...

Structure

guguggacu     g  -g    -----        c   u  U         CA         g  ug 
         ugagu cu  gaag     ugguuguu ccu gU CAAGUAAUC  GGAUAGGCU uc  u
         ||||| ||  ||||     |||||||| ||| || |||||||||  ||||||||| ||   
         acuca gg  cuuc     gccgacgg gga CA GUUCAUUAG  CUUAUCCgg gg  c
------cgu     a  ua    ccguu        u   U  C         UA         a  uc 

Annotation confidence High

Genome context

chr2: 21375467-21375594 [+]

Mature dre-miR-26a-5p

• Accession: MIMAT0001794
• Description: Danio rerio dre-miR-26a-5p mature miRNA
• Sequence: 37 - UUCAAGUAAUCCAGGAUAGGCU - 58
• Evidence: experimental ; cloned [1]

Mature dre-miR-26a-2-3p

• Accession: MIMAT0031948
• Description: Danio rerio dre-miR-26a-2-3p mature miRNA
• Sequence: 73 - CCUAUUCAUGAUUACUUGCACU - 94
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293