Stem-loop dre-mir-196b

Accession

MI0002036

Description

Danio rerio dre-mir-196b precursor miRNA

Gene family

MIPF0000031; mir-196

Literature search

10 open access papers mention dre-mir-196b
(31 sentences)

Sequence

3094 reads, 192 reads per million, 11 experiments

gucugugauuUAGGUAGUUUCAAGUUGUUGGGcuggacguuuaauuucacaggaaccugaaacugccugaauugcucca
....((((((((((((((((((.(((.(((...((((........))))))).))).))))))))))))))))))....

Structure

gucu                  A   G   GGc    cgu 
    gugauuUAGGUAGUUUCA GUU UUG   ugga   u
    |||||||||||||||||| ||| |||   ||||    
    cguuaaguccgucaaagu caa gac   acuu   u
accu                  c   g   ---    uaa 

Annotation confidence High

Genome context

chr3: 23673377-23673455 [+]

Mature dre-miR-196b

• Accession: MIMAT0001860
• Description: Danio rerio dre-miR-196b mature miRNA
• Sequence: 11 - UAGGUAGUUUCAAGUUGUUGGG - 32
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293