miRBase entry: dre-mir-430a-9

Stem-loop dre-mir-430a-9


Accession
MI0002118
Description
Danio rerio dre-mir-430a-9 precursor miRNA miR-430
Gene
family?
RF01413; miR-430

Literature search
38 open access papers mention dre-mir-430a-9
(204 sentences)

Sequence

2380590 reads, 78591 reads per million, 5 experiments
gucacuaucgguACCCUCACAAAGGCACUGACUuggaugcuguaauuggUAAGUGCUAUUUGUUGGGGUAGuuucaagugac
((((((...(.((((((.(((((((((((.(((..(((......)))))).)))))).))))).)))))).)....))))))

Structure
      -auc g      C     -      G   ug   gc 
gucacu    g uACCCU ACAAA GGCACU ACU  gau  u
||||||    | |||||| ||||| |||||| |||  |||   
caguga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
      acuu G      U     A      A   --   au 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr4: 28706690-28706771 [+]
Clustered miRNAs
45 other miRNAs are < 10 kb from dre-mir-430a-9
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-430a-3p

Accession MIMAT0001423
Description Danio rerio dre-miR-430a-3p mature miRNA
Sequence 50 - UAAGUGCUAUUUGUUGGGGUAG - 71
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-430a-5p

Accession MIMAT0031994
Description Danio rerio dre-miR-430a-5p mature miRNA
Sequence 13 - ACCCUCACAAAGGCACUGACU - 33
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15774722
    MicroRNAs regulate brain morphogenesis in zebrafish
    "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
    "Science (2005) 308:833-838