miRBase entry: dre-mir-16b

Stem-loop dre-mir-16b


Accession
MI0001895
Description
Danio rerio dre-mir-16b precursor miRNA mir-15
Gene
family?
RF00455; mir-15

Literature search
10 open access papers mention dre-mir-16b
(17 sentences)

Sequence

9878 reads, 740 reads per million, 11 experiments
ccugaacuuggccgugugacagacuggcugccuggcugUAGCAGCACGUAAAUAUUGGAGucaaagcacuugcgaauccuccaguauugaccgugcugcuggaguuaggcgggccguuuaccgucugcgggggccucggg
(((((....((((.(.((.((((((((((((((((((.((((((((((..((((((((((.....((....)).....))))))))))...)))))))))).)))))))).)))))......))))))).))))))))))

Structure
     acuu    g g  a     ------     -        g          -UA          ucaaa  a 
ccuga    ggcc u ug cagac      uggcu gccuggcu UAGCAGCACG   AAUAUUGGAG     gc c
|||||    |||| | || |||||      ||||| |||||||| ||||||||||   ||||||||||     ||  
gggcu    ccgg g gc gucug      gccgg cggauuga gucgucgugc   uuaugaccuc     cg u
     ----    - g  -     ccauuu     g        g          cag          cuaag  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 46722379-46722518 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-16b

Accession MIMAT0001775
Description Danio rerio dre-miR-16b mature miRNA
Sequence 39 - UAGCAGCACGUAAAUAUUGGAG - 60
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293