miRBase entry: dre-mir-365-2

Stem-loop dre-mir-365-2


Accession
MI0002069
Description
Danio rerio dre-mir-365-2 precursor miRNA

Literature search
2 open access papers mention dre-mir-365-2
(3 sentences)

Sequence

980 reads, 103 reads per million, 9 experiments
aggcagcaagaaaaaugagggacuuuuaggggcagcuguguuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcaauuuucagc
.....((((((..((((((((..(((((((((((((((.(((.....))).)))).....))))))))))).))))))))..))))))..........

Structure
-----aggca      aa        ac           -----    u   u 
          gcaaga  aaugaggg  uuuuaggggca     gcug guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
cgacuuuuaa      cg        -A           AAUac    c   u 


Annotation confidence High
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Genome context
chr3: 35960989-35961086 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-365-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-365

Accession MIMAT0001875
Description Danio rerio dre-miR-365 mature miRNA
Sequence 58 - UAAUGCCCCUAAAAAUCCUUAU - 79
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293