miRBase entry: dre-mir-430b-18

Stem-loop dre-mir-430b-18


Accession
MI0002158
Description
Danio rerio dre-mir-430b-18 precursor miRNA miR-430
Gene
family?
RF01413; miR-430

Literature search
40 open access papers mention dre-mir-430b-18
(212 sentences)

Sequence

11360829 reads, 244441 reads per million, 9 experiments
caguugagguCAACUCUAACUUUAGCAUCUUUCuuuuaagcaaaguagAAAGUGCUAUCAAGUUGGGGUAGauguuuguug
.....((.(((.(((((((((((((((.((((((............)))))))))))..)))))))))).))).)).....

Structure
caguu  g   A          --     U      uuuaa 
     ga guC ACUCUAACUU  UAGCA CUUUCu     g
     || ||| ||||||||||  ||||| ||||||      
     uu uaG UGGGGUUGAA  AUCGU GAAAga     c
guugu  g   A          CU     -      ugaaa 


Annotation confidence High
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Genome context
chr4: 28702456-28702536 [+]
Clustered miRNAs
57 other miRNAs are < 10 kb from dre-mir-430b-18
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-430b-3p

Accession MIMAT0001424
Description Danio rerio dre-miR-430b-3p mature miRNA
Sequence 49 - AAAGUGCUAUCAAGUUGGGGUAG - 71
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-430b-5p

Accession MIMAT0031928
Description Danio rerio dre-miR-430b-5p mature miRNA
Sequence 11 - CAACUCUAACUUUAGCAUCUUUC - 33
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15774722
    MicroRNAs regulate brain morphogenesis in zebrafish
    "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
    "Science (2005) 308:833-838