Stem-loop dre-mir-430a-18

Accession

MI0002131

Description

Danio rerio dre-mir-430a-18 precursor miRNA

Literature search

38 open access papers mention dre-mir-430a-18
(204 sentences)

Sequence

2378628 reads, 77872 reads per million, 5 experiments

gucaggcuuucacaagccagccucaaaguuuguucucaaacuuuaagaaucuaguuggUAAGUGCUAUUUGUUGGGGUAGuuucaaguga
....(((((....))))).(((((((((((((....)))))))........((((........)))).....))))))............

Structure

gucaggcuuucacaagcca      aaguuuguucucaaacuuuaagaauc    ugg 
                   gccuca                          uagu   U
                   ||||||                          ||||    
                   UGGGGU                          AUCG   A
-------agugaacuuuGA      ---------------------UGUUU    UGA 

Annotation confidence Not enough data

Genome context

chr4: 28693199-28693288 [+]

Clustered miRNAs

35 other miRNAs are < 10 kb from dre-mir-430a-18

Mature dre-miR-430a-3p

• Accession: MIMAT0001423
• Description: Danio rerio dre-miR-430a-3p mature miRNA
• Sequence: 59 - UAAGUGCUAUUUGUUGGGGUAG - 80
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15774722
   MicroRNAs regulate brain morphogenesis in zebrafish
   "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
   "Science (2005) 308:833-838