Stem-loop dre-mir-24-2

Accession

MI0001919

Description

Danio rerio dre-mir-24-2 precursor miRNA mir-24

Gene
family

RF00178; mir-24

Literature search

6 open access papers mention dre-mir-24-2
(86 sentences)

Sequence

12420 reads, 629 reads per million, 11 experiments

gggcuggucuccugugccugcugugcugauaaucaguggacggcugugacUGGCUCAGUUCAGCAGGAACAGgggccugguc
.((((((.(((((((.(((((((.(((((...(((((..((....)).))))).))))).))))))).))))))).))))))

Structure

g      u       g       u     uaa     gg  g 
 ggcugg cuccugu ccugcug gcuga   ucagu  ac g
 |||||| ||||||| ||||||| |||||   |||||  ||  
 cugguc gggGACA GGACGAC UGACU   GGUca  ug c
-      c       A       U     --C     -g  u 

Annotation confidence High

Genome context

chr3: 13412979-13413060 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-24-2

Mature dre-miR-24

• Accession: MIMAT0001792
• Description: Danio rerio dre-miR-24 mature miRNA
• Sequence: 51 - UGGCUCAGUUCAGCAGGAACAG - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293