miRBase entry: dre-mir-146a

Stem-loop dre-mir-146a


Accession
MI0002012
Description
Danio rerio dre-mir-146a precursor miRNA

Literature search
12 open access papers mention dre-mir-146a
(168 sentences)

Sequence

161982 reads, 11796 reads per million, 10 experiments
gaguuuguuuugagcacuuuucccUGAGAACUGAAUUCCAUAGAUGGuguucaugaaaaguucaucuaugggcucaguucuucuggcaaucuguuuaaugucugcuacaaauuc
((((((((.(((((((..((.((..(((((((((..(((((((((((..............))))))))))).)))))))))..)).))..)))))))........))))))))

Structure
        -------u       cu  u  cU         AU           uguuca 
gaguuugu        uugagca  uu cc  GAGAACUGA  UCCAUAGAUGG      u
||||||||        |||||||  || ||  |||||||||  |||||||||||       
cuuaaaca        aauuugu  aa gg  uucuugacu  ggguaucuacu      g
        ucgucugu       cu  c  uc         -c           ugaaaa 


Annotation confidence High
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Genome context
chr13: 11822170-11822283 [+]

Database links

Mature dre-miR-146a

Accession MIMAT0001843
Description Danio rerio dre-miR-146a mature miRNA
Sequence 25 - UGAGAACUGAAUUCCAUAGAUGG - 47
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293