miRBase entry: dre-mir-462

Stem-loop dre-mir-462

Accession

MI0002028

Description

Danio rerio dre-mir-462 precursor miRNA mir-462

Gene
family?

RF03683; mir-462

Literature search

4 open access papers mention dre-mir-462
(16 sentences)

Sequence

487048 reads, 33280 reads per million, 11 experiments

gucuggauggUAACGGAACCCAUAAUGCAGCUguuugguugauugauugacagcugucuguggauuccgugccccuccuuucuugcaggagcucauugagau
((((.(((((..((((((.(((((..(((((((((..(((....))).))))))))).))))).))))))((.(((.(......).))).))))))).))))

Structure

    g     --------------------UA      C     AU         ug   g 
gucu gaugg                      ACGGAA CCAUA  GCAGCUguu  guu a
|||| |||||                      |||||| |||||  |||||||||  |||  
uaga uuacu                      ugccuu ggugu  ugucgacag  uag u
    g     cgaggacguucuuuccuccccg      a     -c         -u   u

Annotation confidence Not enough data

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Genome context

chr8: 26082308-26082409 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-462

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-462

Accession	MIMAT0001855
Description	Danio rerio dre-miR-462 mature miRNA
Sequence	11 - UAACGGAACCCAUAAUGCAGCU - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293