miRBase entry: dre-mir-23b

Stem-loop dre-mir-23b

Accession

MI0001917

Description

Danio rerio dre-mir-23b precursor miRNA

Literature search

12 open access papers mention dre-mir-23b
(58 sentences)

Sequence

6537 reads, 745 reads per million, 11 experiments

guggcuguguggguucuuggcaugcugauuugugacuguaguaaaaaaaaAUCACAUUGCCAGGGAUUACCAcacuaccac
((((..((((((((((((((((((.((((((.................)))))))).))))))))))..))))))..))))

Structure

    cu      --          -  c      gugacug 
gugg  gugugg  guucuuggca ug ugauuu       u
||||  ||||||  |||||||||| || ||||||       a
cacc  cacACC  UAGGGACCGU AC ACUAaa       g
    au      AU          U  -      aaaaaau

Annotation confidence Not enough data

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Genome context

chr10: 15954579-15954659 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-23b

Accession	MIMAT0001791
Description	Danio rerio dre-miR-23b mature miRNA
Sequence	51 - AUCACAUUGCCAGGGAUUACCA - 72
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293