miRBase entry: dre-mir-23b

Stem-loop dre-mir-23b


Accession
MI0001917
Description
Danio rerio dre-mir-23b precursor miRNA

Literature search
12 open access papers mention dre-mir-23b
(58 sentences)

Sequence

6537 reads, 858 reads per million, 11 experiments
guggcuguguggguucuuggcaugcugauuugugacuguaguaaaaaaaaAUCACAUUGCCAGGGAUUACCAcacuaccac
((((..((((((((((((((((((.((((((.................)))))))).))))))))))..))))))..))))

Structure
    cu      --          -  c      gugacug 
gugg  gugugg  guucuuggca ug ugauuu       u
||||  ||||||  |||||||||| || ||||||       a
cacc  cacACC  UAGGGACCGU AC ACUAaa       g
    au      AU          U  -      aaaaaau 


Annotation confidence Not enough data
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Genome context
chr10: 15954579-15954659 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-23b

Accession MIMAT0001791
Description Danio rerio dre-miR-23b mature miRNA
Sequence 51 - AUCACAUUGCCAGGGAUUACCA - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293