miRBase entry: dre-mir-15a-1

Stem-loop dre-mir-15a-1


Accession
MI0001891
Description
Danio rerio dre-mir-15a-1 precursor miRNA mir-15
Gene
family?
RF00455; mir-15

Literature search
12 open access papers mention dre-mir-15a-1
(27 sentences)

Sequence

1344 reads, 226 reads per million, 11 experiments
ccugucgguacugUAGCAGCACAGAAUGGUUUGUGaguuauaacgggggugCAGGCCGUACUGUGCUGCGGCAacaacgacagg
(((((((....(((.(((((((((.(((((((((................))))))))).))))))))).)))....)))))))

Structure
       guac   A         A         Gaguuau 
ccugucg    ugU GCAGCACAG AUGGUUUGU       a
|||||||    ||| ||||||||| |||||||||        
ggacagc    ACG CGUCGUGUC UGCCGGACg       a
       aaca   G         A         ugggggc 


Annotation confidence High
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Genome context
chr1: 46722622-46722705 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-15a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-15a-5p

Accession MIMAT0001772
Description Danio rerio dre-miR-15a-5p mature miRNA
Sequence 14 - UAGCAGCACAGAAUGGUUUGUG - 35
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-15a-3p

Accession MIMAT0003395
Description Danio rerio dre-miR-15a-3p mature miRNA
Sequence 52 - CAGGCCGUACUGUGCUGCGGCA - 73
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293