miRBase entry: dre-mir-153c

Stem-loop dre-mir-153c


Accession
MI0002022
Description
Danio rerio dre-mir-153c precursor miRNA mir-153
Gene
family?
RF00650; mir-153

Literature search
4 open access papers mention dre-mir-153c
(137 sentences)

Sequence

2172 reads, 254 reads per million, 10 experiments
gauggagaucaguaggucccuggacguagcacaccucccaguGUCAUUUUUGUGAUUUGCAGCUaguagucuggguccagUUGCAUAGUCACAAAAAUGAUCauugguaggugugagugcagcaggagugaggcuuaccggauccuccauc
((((((((((.(((((((((((...(((.(((((((.(((((((((((((((((((((((((((.(..........).))))))).)))))))))))))).)))))).)))))))..)))..)))).....)))))))..))).)))))))

Structure
       -   -a       -----    gac   -g       c      -              -       a uagu 
gauggag auc  guagguc     ccug   gua  cacaccu ccaguG UCAUUUUUGUGAUU UGCAGCU g    c
||||||| |||  |||||||     ||||   |||  ||||||| |||||| |||||||||||||| ||||||| |     
cuaccuc uag  cauucgg     ggac   cgu  gugugga gguuaC AGUAAAAACACUGA ACGUUga c    u
       c   gc       aguga    -ga   ga       u      U              U       c uggg 


Annotation confidence High
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Genome context
chr9: 7612376-7612526 [+]

Database links

Mature dre-miR-153c-3p

Accession MIMAT0001850
Description Danio rerio dre-miR-153c-3p mature miRNA
Sequence 81 - UUGCAUAGUCACAAAAAUGAUC - 102
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-153c-5p

Accession MIMAT0031979
Description Danio rerio dre-miR-153c-5p mature miRNA
Sequence 43 - GUCAUUUUUGUGAUUUGCAGCU - 64
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293