miRBase entry: dre-mir-365-3

Stem-loop dre-mir-365-3


Accession
MI0002070
Description
Danio rerio dre-mir-365-3 precursor miRNA

Literature search
2 open access papers mention dre-mir-365-3
(3 sentences)

Sequence

978 reads, 102 reads per million, 9 experiments
aagucagcaagaaaagugagggacuuuuaggggcagcuguguuauacugacccagucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcagugcucaac
.((((.((((((..((((((((..(((((((((((((((.((((...)))).)))).....))))))))))).))))))))..)))))).).)))....

Structure
---a   - a      aa        ac           -----    u    u 
    agu c gcaaga  agugaggg  uuuuaggggca     gcug guua  
    ||| | ||||||  ||||||||  |||||||||||     |||| |||| a
    ucg g cguucu  uUAUUCCU  AAAAUCCCCGU     ugac cagu  
caac   u a      cg        -A           AAUac    c    c 


Annotation confidence High
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Genome context
chr6: 18516311-18516409 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-365-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-365

Accession MIMAT0001875
Description Danio rerio dre-miR-365 mature miRNA
Sequence 59 - UAAUGCCCCUAAAAAUCCUUAU - 80
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293