miRBase entry: dre-mir-202

Stem-loop dre-mir-202


Accession
MI0002040
Description
Danio rerio dre-mir-202 precursor miRNA mir-202
Gene
family?
RF00705; mir-202

Literature search
4 open access papers mention dre-mir-202
(117 sentences)

Sequence

53 reads, 32 reads per million, 6 experiments
cuguuccuuuUUCCUAUGCAUAUACCUCUUUGacaugcugcuuuaaAGAGGCAUAGGGCAUGGGAAAAuggggcgg
(((((((.(((((((((((.(((.(((((((((.........))))))))).)))..))))))))))).)))))))

Structure
       u           -A   A         cau 
cuguucc uuUUCCUAUGC  UAU CCUCUUUGa   g
||||||| |||||||||||  ||| |||||||||   c
ggcgggg AAAAGGGUACG  AUA GGAGAaauu   u
       u           GG   C         ucg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr13: 50602639-50602714 [+]

Database links

Mature dre-miR-202-5p

Accession MIMAT0003406
Description Danio rerio dre-miR-202-5p mature miRNA
Sequence 11 - UUCCUAUGCAUAUACCUCUUUG - 32
Evidence experimental
cloned [1]
Database links

Mature dre-miR-202-3p

Accession MIMAT0001864
Description Danio rerio dre-miR-202-3p mature miRNA
Sequence 47 - AGAGGCAUAGGGCAUGGGAAAA - 68
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293