Stem-loop dre-let-7e

Accession

MI0001871

Description

Danio rerio dre-let-7e precursor miRNA

Literature search

75 open access papers mention dre-let-7e
(244 sentences)

Sequence

2423797 reads, 2393.0 reads per million, 299 experiments

gcuguucuuggggcUGAGGUAGUAGAUUGAAUAGUUGuggagcccugcgcucucucucugagauaaCUAUACAAUCUACUGUCUUUCcuaaggcgacagc
(((((((((((((..((((((((((((((.(((((((((((((.....)))))(((...))))))))))).)))))))))))))))))))))..))))))

Structure

      --       cU              A        ---------     c 
gcuguu  cuugggg  GAGGUAGUAGAUUG AUAGUUGu         ggagc c
||||||  |||||||  |||||||||||||| ||||||||         ||||| u
cgacag  gaaucCU  UUCUGUCAUCUAAC UAUCaaua         ucucg g
      cg       --              A        gagucucuc     c 

Annotation confidence High

Genome context

chr23: 5431418-5431517 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7e

Mature dre-let-7e-5p

• Accession: MIMAT0001763
• Description: Danio rerio dre-let-7e-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGAUUGAAUAGUUG - 37

Mature dre-let-7e-3p

• Accession: MIMAT0052747
• Description: Danio rerio dre-let-7e-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUACUGUCUUUC - 87

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293