miRBase entry: dre-mir-30e-2

Stem-loop dre-mir-30e-2


Accession
MI0001950
Description
Danio rerio dre-mir-30e-2 precursor miRNA

Literature search
11 open access papers mention dre-mir-30e-2
(144 sentences)

Sequence

58548 reads, 2501 reads per million, 11 experiments
uacgggcuacUGUAAACAUCCUUGACUGGAAGcuggugcacaugauggagCUUUCAGUCGGAUGUUUGCAGCagccaacu
....((((.((((((((((((..(((((((((((....(....)....))))))))))))))))))))))).))))....

Structure
uacg    a            UU           ggug a 
    ggcu cUGUAAACAUCC  GACUGGAAGcu    c c
    |||| ||||||||||||  |||||||||||    |  
    ccga GACGUUUGUAGG  CUGACUUUCga    g a
ucaa    C            --           ggua u 


Annotation confidence High
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Genome context
chr13: 27795130-27795209 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-30e-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-30e-5p

Accession MIMAT0001807
Description Danio rerio dre-miR-30e-5p mature miRNA
Sequence 11 - UGUAAACAUCCUUGACUGGAAG - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-30e-3p

Accession MIMAT0003402
Description Danio rerio dre-miR-30e-3p mature miRNA
Sequence 51 - CUUUCAGUCGGAUGUUUGCAGC - 72
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293