miRBase entry: dre-mir-153b

Stem-loop dre-mir-153b


Accession
MI0002019
Description
Danio rerio dre-mir-153b precursor miRNA mir-153
Gene
family?
RF00650; mir-153

Literature search
4 open access papers mention dre-mir-153b
(138 sentences)

Sequence

7696 reads, 690 reads per million, 9 experiments
gagcgauggagcgcgguagcgagguauugcacagcugucuguGUCAUUUUUGUGGUUUGCAGCUaguagucugguuccagUUGCAUAGUCACAAAAAUGAGCacagacagaugugacugcagcaacgcugaugaaacgcuccaucgcc
..(((((((((((((.(((((..((...(((((.((((((((((((((((((((((((((((((.(..........).))))))).)))))))))))))).))))))))).)))).)....))..))))).))...))))))))))).

Structure
ga           ---  g     ag  -auu -    g         -              -       a uagu 
  gcgauggagcg   cg uagcg  gu    g caca cugucuguG UCAUUUUUGUGGUU UGCAGCU g    c
  |||||||||||   || |||||  ||    | |||| ||||||||| |||||||||||||| ||||||| |     
  cgcuaccucgc   gu gucgc  cg    c gugu gacagacaC AGUAAAAACACUGA ACGUUga c    u
-c           aaa  a     aa  acgu a    a         G              U       c uugg 


Annotation confidence High
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Genome context
chr6: 13980945-13981092 [+]

Database links

Mature dre-miR-153b-3p

Accession MIMAT0001848
Description Danio rerio dre-miR-153b-3p mature miRNA
Sequence 81 - UUGCAUAGUCACAAAAAUGAGC - 102
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-153b-5p

Accession MIMAT0031977
Description Danio rerio dre-miR-153b-5p mature miRNA
Sequence 43 - GUCAUUUUUGUGGUUUGCAGCU - 64
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293