Stem-loop dre-mir-153b

Accession

MI0002019

Description

Danio rerio dre-mir-153b precursor miRNA mir-153

Gene
family

RF00650; mir-153

Literature search

6 open access papers mention dre-mir-153b
(139 sentences)

Sequence

452487 reads, 457.0 reads per million, 246 experiments

gagcgauggagcgcgguagcgagguauugcacagcugucuguGUCAUUUUUGUGGUUUGCAGCUaguagucugguuccagUUGCAUAGUCACAAAAAUGAGCacagacagaugugacugcagcaacgcugaugaaacgcuccaucgcc
..(((((((((((((.(((((..((...(((((.((((((((((((((((((((((((((((((.(..........).))))))).)))))))))))))).))))))))).)))).)....))..))))).))...))))))))))).

Structure

ga           ---  g     ag  -auu -    g         -              -       a uagu 
  gcgauggagcg   cg uagcg  gu    g caca cugucuguG UCAUUUUUGUGGUU UGCAGCU g    c
  |||||||||||   || |||||  ||    | |||| ||||||||| |||||||||||||| ||||||| |     
  cgcuaccucgc   gu gucgc  cg    c gugu gacagacaC AGUAAAAACACUGA ACGUUga c    u
-c           aaa  a     aa  acgu a    a         G              U       c uugg 

Annotation confidence High

Genome context

chr6: 13980945-13981092 [+]

Mature dre-miR-153b-5p

• Accession: MIMAT0031977
• Description: Danio rerio dre-miR-153b-5p mature miRNA
• Sequence: 43 - GUCAUUUUUGUGGUUUGCAGCU - 64
• Evidence: not_experimental

Mature dre-miR-153b-3p

• Accession: MIMAT0001848
• Description: Danio rerio dre-miR-153b-3p mature miRNA
• Sequence: 81 - UUGCAUAGUCACAAAAAUGAGC - 102
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293