Stem-loop dre-mir-129-1

Accession

MI0001983

Description

Danio rerio dre-mir-129-1 precursor miRNA

Literature search

3 open access papers mention dre-mir-129-1
(12 sentences)

Sequence

390 reads, 23 reads per million, 8 experiments

guccuuuucagguCUUUUUGCGGUCUGGGCUUGCUguuccuugaaccaguagccagGAAGCCCUUACCCCAAAAAGUaucugcagaggac
(((((((.((((((((((((.(((..((((((.(((((.((......)).)).))).))))))..))).))))))).))))).)))))))

Structure

       u     -       C   CU      G   -  c  ug 
guccuuu caggu CUUUUUG GGU  GGGCUU CUg uu cu  a
||||||| ||||| ||||||| |||  |||||| ||| || ||   
caggaga gucua GAAAAAC CCA  CCCGAA gac ga ga  a
       c     U       C   UU      G   c  u  cc 

Annotation confidence High

Genome context

chr4: 19047466-19047555 [-]

Mature dre-miR-129-5p

• Accession: MIMAT0001825
• Description: Danio rerio dre-miR-129-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-129-1-3p

• Accession: MIMAT0031968
• Description: Danio rerio dre-miR-129-1-3p mature miRNA
• Sequence: 57 - GAAGCCCUUACCCCAAAAAGU - 77
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293