Stem-loop dre-mir-101b

Accession

MI0001961

Description

Danio rerio dre-mir-101b precursor miRNA mir-101

Gene
family

RF00253; mir-101

Literature search

6 open access papers mention dre-mir-101b
(9 sentences)

Sequence

509554 reads, 793.0 reads per million, 268 experiments

gcuccuccgucaugaauuguccauuuuCAGUUAUCAUGGUACCGGUGCUgugugccugucaagUACAGUACUAUGAUAACUGAAGauugacggugccaaacaucaguggagu
....(((((.(.(((((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))........))))))))).

Structure

gcuc     u a   --------      c                    CG     gugug 
    cuccg c uga        auuguc auuuuCAGUUAUCAUGGUAC  GUGCU     c
    ||||| | |||        |||||| ||||||||||||||||||||  |||||      
    gaggu g acu        uggcag uaGAAGUCAAUAGUAUCAUG  CAUga     c
---u     - -   acaaaccg      u                    -A     acugu 

Annotation confidence High

Genome context

chr5: 1837149-1837260 [-]

Mature dre-miR-101b-5p

• Accession: MIMAT0060885
• Description: Danio rerio dre-miR-101b-5p mature miRNA
• Sequence: 28 - CAGUUAUCAUGGUACCGGUGCU - 49
• Evidence: experimental ; cloned [1]

Mature dre-miR-101b-3p

• Accession: MIMAT0001815
• Description: Danio rerio dre-miR-101b-3p mature miRNA
• Sequence: 64 - UACAGUACUAUGAUAACUGAAG - 85
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293