miRBase entry: dre-mir-182

Stem-loop dre-mir-182


Accession
MI0001368
Description
Danio rerio dre-mir-182 precursor miRNA mir-182
Gene
family?
RF00702; mir-182

Literature search
10 open access papers mention dre-mir-182
(117 sentences)

Sequence

31887 reads, 2150 reads per million, 11 experiments
guaUUUGGCAAUGGUAGAACUCACAcuggugagguagucagauccggUGGUUCUAGACUUGCCAACUA
....(((((((...((((((...(((((((((.....)))...))))))))))))...)))))))...

Structure
guaU       UGG      UCA      ---   g 
    UUGGCAA   UAGAAC   CAcugg   uga g
    |||||||   ||||||   ||||||   ||| u
    AACCGUU   AUCUUG   GUggcc   acu a
-AUC       CAG      ---      uag   g 


Annotation confidence Not enough data
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Genome context
chr4: 15075665-15075732 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-182-5p

Accession MIMAT0001271
Description Danio rerio dre-miR-182-5p mature miRNA
Sequence 4 - UUUGGCAAUGGUAGAACUCACA - 25
Evidence experimental
PCR [1], cloned [2]
Database links
Predicted targets

Mature dre-miR-182-3p

Accession MIMAT0001272
Description Danio rerio dre-miR-182-3p mature miRNA
Sequence 48 - UGGUUCUAGACUUGCCAACUA - 68
Evidence experimental
PCR [1]

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293