miRBase entry: dre-mir-9-3

Stem-loop dre-mir-9-3


Accession
MI0001883
Description
Danio rerio dre-mir-9-3 precursor miRNA

Literature search
22 open access papers mention dre-mir-9-3
(214 sentences)

Sequence

41163 reads, 2148 reads per million, 11 experiments
ucaggggguugguuucucUCUUUGGUUAUCUAGCUGUAUGAguuauaacacugucaUAAAGCUAGAUAACCGAAAGUagaaauaauucccaaaaucuuugg
...((((((((.(((((((.(((((((((((((((.(((((............))))).))))))))))))))))).)))))))))))))...........

Structure
--------uca        g     -  C               G     guuau 
           ggggguug uuucu cU UUUGGUUAUCUAGCU UAUGA     a
           |||||||| ||||| || ||||||||||||||| |||||      
           cccuuaau aaaga GA AAGCCAAUAGAUCGA AUacu     a
gguuucuaaaa        -     U  -               A     gucac 


Annotation confidence High
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Genome context
chr25: 8551240-8551340 [-]

Database links

Mature dre-miR-9-5p

Accession MIMAT0001769
Description Danio rerio dre-miR-9-5p mature miRNA
Sequence 19 - UCUUUGGUUAUCUAGCUGUAUGA - 41
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-9-3p

Accession MIMAT0003156
Description Danio rerio dre-miR-9-3p mature miRNA
Sequence 57 - UAAAGCUAGAUAACCGAAAGU - 77
Evidence experimental
array [2], in-situ [2]
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311