Stem-loop dre-mir-22b

Accession

MI0001912

Description

Danio rerio dre-mir-22b precursor miRNA mir-22

Gene
family

RF00653; mir-22

Literature search

5 open access papers mention dre-mir-22b
(7 sentences)

Sequence

3094 reads, 236 reads per million, 11 experiments

guuacuucacaguCGUUCUUCACUGGCUAGCUUUAuguggcagcaccuuaAAGCUGCCAGUUGAAGAGCUGUuguggguaac
((((((.(((((..(((((((((((((.(((((((.(((....)))..)))))))))))).))))))))..)))))))))))

Structure

      u     uC        -     U       -u   g 
guuacu cacag  GUUCUUCA CUGGC AGCUUUA  gug c
|||||| |||||  |||||||| ||||| |||||||  |||  
caaugg guguU  CGAGAAGU GACCG UCGAAau  cac a
      -     GU        U     -       uc   g 

Annotation confidence Medium

Genome context

chr5: 12610802-12610883 [+]

Mature dre-miR-22b-3p

• Accession: MIMAT0001789
• Description: Danio rerio dre-miR-22b-3p mature miRNA
• Sequence: 51 - AAGCUGCCAGUUGAAGAGCUGU - 72
• Evidence: experimental ; cloned [1]

Mature dre-miR-22b-5p

• Accession: MIMAT0031943
• Description: Danio rerio dre-miR-22b-5p mature miRNA
• Sequence: 14 - CGUUCUUCACUGGCUAGCUUUA - 35
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293