miRBase entry: dre-mir-27e

Stem-loop dre-mir-27e


Accession
MI0001932
Description
Danio rerio dre-mir-27e precursor miRNA mir-27
Gene
family?
RF00644; mir-27

Literature search
6 open access papers mention dre-mir-27e
(18 sentences)

Sequence

2798 reads, 210 reads per million, 11 experiments
gucaucacucgcucacggcgcagagcuuagcuaaucggugagcauugaucccuuaagaaaacugUUCACAGUGGCUAAGUUCAGUGucuggagugaacgggaugac
((((((..((((((..(((((.(((((((((((....(((((((.(..((......))..).)))))))..))))))))))).)))))..))))))....))))))

Structure
      --ac      ac     a           aucg       u ga  cc 
gucauc    ucgcuc  ggcgc gagcuuagcua    gugagca u  uc  u
||||||    ||||||  ||||| |||||||||||    ||||||| |  ||   
caguag    agugag  cuGUG CUUGAAUCGGU    CACUUgu a  ag  u
      ggca      gu     A           --GA       c aa  aa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr22: 5299951-5300056 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-27e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-27e

Accession MIMAT0001800
Description Danio rerio dre-miR-27e mature miRNA
Sequence 65 - UUCACAGUGGCUAAGUUCAGUG - 86
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293