Stem-loop dre-mir-194b

Accession

MI0002034

Description

Danio rerio dre-mir-194b precursor miRNA

Literature search

7 open access papers mention dre-mir-194b
(24 sentences)

Sequence

123192 reads, 188.0 reads per million, 249 experiments

gcucgcugggUGUAACAGCCGCUCCAUGUGGAaaaugcauucaagugCCCGUGGAUAAGCUGUUACCUGcagagagu
((((.(((.(.((((((((...((((((.((....((....))....))))))))...)))))))).).))).))))

Structure

    g   g U        CGC      U  Aaaa  c 
gcuc cug g GUAACAGC   UCCAUG GG    ug a
|||| ||| | ||||||||   |||||| ||    ||  
ugag gac U CAUUGUCG   AGGUGC CC    ac u
    a   G C        AAU      -  guga  u 

Annotation confidence High

Genome context

chr14: 45468955-45469031 [-]

Mature dre-miR-194b-5p

• Accession: MIMAT0001859
• Description: Danio rerio dre-miR-194b-5p mature miRNA
• Sequence: 11 - UGUAACAGCCGCUCCAUGUGGA - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-194b-3p

• Accession: MIMAT0052772
• Description: Danio rerio dre-miR-194b-3p mature miRNA
• Sequence: 48 - CCCGUGGAUAAGCUGUUACCUG - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293