miRBase entry: dre-mir-194b

Stem-loop dre-mir-194b


Accession
MI0002034
Description
Danio rerio dre-mir-194b precursor miRNA

Literature search
7 open access papers mention dre-mir-194b
(24 sentences)

Sequence

158 reads, 40 reads per million, 8 experiments
gcucgcugggUGUAACAGCCGCUCCAUGUGGAaaaugcauucaagugcccguggauaagcuguuaccugcagagagu
((((.(((.(.((((((((...((((((.((....((....))....))))))))...)))))))).).))).))))

Structure
    g   g U        CGC      U  Aaaa  c 
gcuc cug g GUAACAGC   UCCAUG GG    ug a
|||| ||| | ||||||||   |||||| ||    ||  
ugag gac u cauugucg   aggugc cc    ac u
    a   g c        aau      -  guga  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 45468955-45469031 [-]

Database links

Mature dre-miR-194b

Accession MIMAT0001859
Description Danio rerio dre-miR-194b mature miRNA
Sequence 11 - UGUAACAGCCGCUCCAUGUGGA - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293