Stem-loop dre-mir-200a

Accession

MI0002037

Description

Danio rerio dre-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

19 open access papers mention dre-mir-200a
(237 sentences)

Sequence

50315 reads, 2632 reads per million, 11 experiments

ggcacuuagcagcCAUCUUACCGGACAGUGCUGGAcuguauaacuguuuucUAACACUGUCUGGUAACGAUGUuuguugggugacc
((((((((((((.(((((((((((((((((.((((..............)))).))))))))))))).)))).)))))))))).))

Structure

  -          c    -             C    cuguau 
gg cacuuagcag CAUC UUACCGGACAGUG UGGA      a
|| |||||||||| |||| ||||||||||||| ||||       
cc guggguuguu GUAG AAUGGUCUGUCAC AUcu      a
  a          U    C             A    uuuguc 

Annotation confidence High

Genome context

chr23: 24072160-24072245 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-200a

Mature dre-miR-200a-3p

• Accession: MIMAT0001861
• Description: Danio rerio dre-miR-200a-3p mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUGU - 73
• Evidence: experimental ; cloned [1]

Mature dre-miR-200a-5p

• Accession: MIMAT0031984
• Description: Danio rerio dre-miR-200a-5p mature miRNA
• Sequence: 14 - CAUCUUACCGGACAGUGCUGGA - 35
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293