miRBase entry: dre-mir-23a-2

Stem-loop dre-mir-23a-2


Accession
MI0001915
Description
Danio rerio dre-mir-23a-2 precursor miRNA

Literature search
11 open access papers mention dre-mir-23a-2
(212 sentences)

Sequence

17132 reads, 2783 reads per million, 11 experiments
cucuucugccggccagggGAAUUCCUGGCAGAGUGAUUUuuaaaccuaaugacugaAUCACAUUGCCAGGGAUUUCCAauggcucgugugacucagag
((((((.((((((((.(((((((((((((((.(((((((...............))))))).)))))))))))))))..)))).)).))))...))))

Structure
    ---  u  -  -    -g               A       uuaaac 
cucu   uc gc cg gcca  ggGAAUUCCUGGCAG GUGAUUU      c
||||   || || || ||||  ||||||||||||||| |||||||      u
gaga   ag ug gc cggu  CCUUUAGGGACCGUU CACUAag      a
    cuc  -  u  u    aA               A       ucagua 


Annotation confidence High
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Genome context
chr3: 13406226-13406323 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-23a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-23a-3p

Accession MIMAT0001790
Description Danio rerio dre-miR-23a-3p mature miRNA
Sequence 57 - AUCACAUUGCCAGGGAUUUCCA - 78
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-23a-5p

Accession MIMAT0031944
Description Danio rerio dre-miR-23a-5p mature miRNA
Sequence 19 - GAAUUCCUGGCAGAGUGAUUU - 39
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293