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Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems |
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|---|---|
| PubMed ID | 21740560 |
| Authors | Calviño M, Bruggmann R, Messing J |
| Journal | BMC Genomics |
| Volume | 12 |
| Pages | 356 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| sbi-MIR5381 | MI0018688 | None | chr1 | 562993 | 563102 | + | Low |
| sbi-MIR5382 | MI0018689 | None | chr2 | 1896458 | 1896567 | + | Low |
| sbi-MIR5383 | MI0018690 | None | chr4 | 43795826 | 43795935 | + | Low |
| sbi-MIR5384 | MI0018691 | None | chr4 | 46382362 | 46382471 | + | - |
| sbi-MIR5385 | MI0018692 | None | chr6 | 55351481 | 55351590 | + | Medium |
| sbi-MIR5386 | MI0018693 | None | chr7 | 854632 | 854741 | + | - |
| sbi-MIR5387a | MI0018694 | None | chr7 | 17116510 | 17116619 | + | Low |
| sbi-MIR5388 | MI0018695 | None | chr8 | 1576943 | 1577052 | + | - |
| sbi-MIR5389 | MI0018696 | None | chr8 | 4826959 | 4827068 | + | - |
| zma-MIR160a | MI0001465 | 1707 | 4 | 244974783 | 244974886 | + | - |
| zma-MIR160c | MI0001466 | 2127 | 6 | 14743833 | 14743932 | + | - |
| zma-MIR160d | MI0001467 | 2388 | 1 | 290387877 | 290388018 | - | - |
| zma-MIR160b | MI0001468 | 1502 | 5 | 44520650 | 44520770 | - | High |
| zma-MIR164a | MI0001469 | 2975 | 2 | 223359910 | 223360061 | - | - |
| zma-MIR164d | MI0001470 | 2975 | 7 | 181785756 | 181785971 | - | - |
| zma-MIR164b | MI0001471 | 3176 | 6 | 152778225 | 152778352 | + | - |
| zma-MIR164c | MI0001472 | 11750 | 6 | 164493875 | 164494144 | + | Low |
| zma-MIR169a | MI0001473 | 2201 | 3 | 37821003 | 37821132 | + | Medium |
| zma-MIR169b | MI0001474 | 1649 | 8 | 5103265 | 5103420 | - | Medium |
| zma-MIR160e | MI0001479 | 1755 | 7 | 5114283 | 5114377 | - | High |
| zma-MIR172a | MI0001493 | 5343 | 7 | 53800029 | 53800111 | - | - |
| zma-MIR172d | MI0001494 | 5334 | 6 | 179347999 | 179348072 | + | - |
| zma-MIR172b | MI0001495 | 5334 | 5 | 224242493 | 224242618 | - | - |
| zma-MIR172c | MI0001496 | 5389 | 4 | 176265726 | 176265848 | + | - |
| sbi-MIR172b | MI0001501 | None | chr3 | 74188339 | 74188508 | - | - |
| sbi-MIR172c | MI0001502 | None | chr4 | 67645991 | 67646109 | - | High |
| sbi-MIR172a | MI0001503 | None | chr9 | 58774558 | 58774659 | - | High |
| sbi-MIR160d | MI0001507 | None | chr1 | 5218433 | 5218532 | - | High |
| sbi-MIR160a | MI0001508 | None | chr4 | 4215241 | 4215324 | - | High |
| sbi-MIR160c | MI0001509 | None | chr7 | 2618794 | 2618876 | + | High |
| sbi-MIR160b | MI0001510 | None | chr10 | 57093822 | 57093903 | + | High |
| sbi-MIR160e | MI0001511 | None | chr2 | 2883714 | 2883808 | - | High |
| sbi-MIR164a | MI0001512 | None | chr9 | 38911782 | 38911907 | - | High |
| sbi-MIR169b | MI0001515 | None | chr10 | 56120427 | 56120528 | - | High |
| sbi-MIR169a | MI0001516 | None | chr3 | 10749535 | 10749625 | + | High |
| sbi-MIR395b | MI0001533 | None | chr6 | 57784145 | 57784249 | + | High |
| sbi-MIR395a | MI0001534 | None | chr6 | 57783551 | 57783700 | + | High |
| sbi-MIR395d | MI0001536 | None | chr6 | 57228519 | 57228621 | - | Medium |
| sbi-MIR395e | MI0001537 | None | chr6 | 57228710 | 57228814 | - | High |
| sbi-MIR164b | MI0001549 | None | chr4 | 65513692 | 65513802 | - | High |
| sbi-MIR169c | MI0001557 | None | chr6 | 39850630 | 39850755 | + | High |
| sbi-MIR169d | MI0001558 | None | chr6 | 39811386 | 39811557 | + | High |
| sbi-MIR169f | MI0001560 | None | chr2 | 64543540 | 64543687 | + | High |
| sbi-MIR169g | MI0001561 | None | chr2 | 64546373 | 64546524 | + | High |
| sbi-MIR169i | MI0001563 | None | chr5 | 16922857 | 16923025 | + | Medium |
| sbi-MIR172e | MI0001568 | None | chr2 | 14122957 | 14123071 | - | - |
| sbi-MIR319a | MI0001573 | None | chr3 | 1244769 | 1245017 | + | Low |
| zma-MIR395b | MI0001796 | 18 | 2 | 6550417 | 6550530 | - | - |
| zma-MIR395c | MI0001798 | 0 | 10 | 80479861 | 80479998 | - | - |
| zma-MIR395a | MI0001799 | 1332 | 2 | 6551072 | 6551220 | - | - |
| zma-MIR319a | MI0001813 | 15703 | 3 | 217745717 | 217745925 | + | High |
| zma-MIR319c | MI0001814 | 19645 | 8 | 152130701 | 152130916 | - | High |
| zma-MIR319b | MI0001815 | 13480 | 3 | 2845355 | 2845567 | + | High |
| zma-MIR319d | MI0001816 | 13900 | 8 | 27460544 | 27460755 | - | High |
| zma-MIR169c | MI0001826 | 16201 | 2 | 11801045 | 11801178 | + | Medium |
| zma-MIR169f | MI0001827 | 1983 | 5 | 168004586 | 168004735 | + | - |
| zma-MIR169g | MI0001828 | 1754 | 2 | 67762521 | 67762660 | + | Low |
| zma-MIR169h | MI0001829 | 1280 | 4 | 49933022 | 49933149 | + | Medium |
| zma-MIR169i | MI0001830 | 2459 | 4 | 49606834 | 49607024 | + | Medium |
| zma-MIR169k | MI0001831 | 2351 | 7 | 143533494 | 143533626 | + | Medium |
| zma-MIR169j | MI0001832 | 2595 | 2 | 198645545 | 198645695 | + | Medium |
| zma-MIR169d | MI0001833 | 444 | 4 | 49873250 | 49873377 | - | - |
| zma-MIR169e | MI0001834 | 444 | 4 | 49933023 | 49933150 | - | - |
| zma-MIR172e | MI0001840 | 2028 | 3 | 146624664 | 146624837 | + | - |
| zma-MIR160f | MI0001848 | 1329 | 2 | 241239796 | 241239911 | + | - |
| sbi-MIR164c | MI0001852 | None | chr1 | 68718394 | 68718546 | - | Medium |
| sbi-MIR395f | MI0001855 | None | chr6 | 57228009 | 57228130 | - | Medium |
| sbi-MIR160f | MI0010864 | None | chr7 | 64834676 | 64834785 | - | - |
| sbi-MIR164d | MI0010865 | None | chr2 | 76208220 | 76208379 | - | High |
| sbi-MIR164e | MI0010866 | None | chr9 | 44994962 | 44995166 | + | - |
| sbi-MIR169e | MI0010873 | None | None | None | - | ||
| sbi-MIR169h | MI0010874 | None | None | None | Medium | ||
| sbi-MIR169j | MI0010875 | None | chr4 | 58677581 | 58677703 | + | - |
| sbi-MIR169k | MI0010876 | None | chr6 | 55762145 | 55762241 | - | High |
| sbi-MIR169l | MI0010877 | None | chr7 | 62246903 | 62246999 | - | High |
| sbi-MIR169m | MI0010878 | None | chr7 | 62252290 | 62252381 | - | High |
| sbi-MIR169n | MI0010879 | None | chr7 | 62255445 | 62255537 | + | High |
| sbi-MIR172d | MI0010885 | None | None | None | - | ||
| sbi-MIR319b | MI0010886 | None | chr3 | 58355317 | 58355495 | - | Low |
| sbi-MIR395c | MI0010890 | None | None | None | High | ||
| sbi-MIR395g | MI0010891 | None | chr6 | 57784324 | 57784391 | + | High |
| sbi-MIR395h | MI0010892 | None | chr6 | 57784485 | 57784565 | + | High |
| sbi-MIR395i | MI0010893 | None | chr7 | 4623362 | 4623458 | + | High |
| sbi-MIR395j | MI0010894 | None | chr7 | 4623545 | 4623631 | + | High |
| sbi-MIR395k | MI0010895 | None | chr7 | 4623715 | 4623794 | + | High |
| sbi-MIR395l | MI0010896 | None | chr7 | 4624021 | 4624104 | + | High |
| sbi-MIR437g | MI0010908 | None | chr1 | 66620183 | 66620358 | - | Medium |
| zma-MIR160g | MI0013192 | 1537 | 6 | 101121028 | 101121113 | + | High |
| zma-MIR164e | MI0013193 | 3520 | 1 | 46682211 | 46682326 | + | - |
| zma-MIR164f | MI0013194 | 2839 | 4 | 181555581 | 181555688 | + | - |
| zma-MIR164g | MI0013195 | 3844 | 6 | 149358763 | 149358933 | - | - |
| zma-MIR164h | MI0013196 | 9316 | 8 | 121512189 | 121512407 | + | - |
| zma-MIR169l | MI0013199 | 0 | 1 | 305227392 | 305227480 | + | - |
| zma-MIR169m | MI0013200 | 491 | 3 | 103547345 | 103547445 | + | - |
| zma-MIR169n | MI0013201 | 6 | 3 | 235766947 | 235767050 | + | - |
| zma-MIR169o | MI0013202 | 1048 | 4 | 13971602 | 13971739 | + | - |
| zma-MIR169p | MI0013203 | 1338 | 7 | 115747093 | 115747157 | - | - |
| zma-MIR169q | MI0013204 | 40 | 8 | 130146941 | 130147046 | + | - |
| zma-MIR169r | MI0013205 | 758 | 9 | 113611057 | 113611182 | - | - |
| zma-MIR395d | MI0013212 | 6 | 2 | 6539320 | 6539385 | - | - |
| zma-MIR395e | MI0013213 | 235 | 2 | 6549440 | 6549524 | - | - |
| zma-MIR395f | MI0013214 | 6 | 2 | 6539976 | 6540045 | - | - |
| zma-MIR395g | MI0013215 | 6 | 2 | 6540136 | 6540201 | - | - |
| zma-MIR395h | MI0013216 | 235 | 2 | 6549440 | 6549524 | - | - |
| zma-MIR395i | MI0013217 | 18 | 2 | 6549617 | 6549686 | - | - |
| zma-MIR395j | MI0013218 | 235 | 2 | 6549440 | 6549524 | - | - |
| zma-MIR395k | MI0013219 | 0 | 10 | 80479415 | 80479498 | - | - |
| zma-MIR395l | MI0013220 | 0 | 10 | 80479586 | 80479666 | - | - |
| zma-MIR395m | MI0013221 | 0 | 10 | 80479715 | 80479796 | - | - |
| zma-MIR395n | MI0013222 | 15 | 10 | 146921813 | 146921878 | + | - |
| zma-MIR395o | MI0013223 | 290 | 10 | 146921986 | 146922211 | + | - |
| zma-MIR395p | MI0013224 | 15 | 10 | 146922304 | 146922392 | + | - |
| sbi-MIR169o | MI0013253 | None | chr1 | 1019419 | 1019521 | - | High |
| sbi-MIR169p | MI0013254 | None | chr8 | 1349656 | 1349760 | + | High |
| sbi-MIR169q | MI0013255 | None | chr8 | 12317865 | 12317968 | - | High |
| sbi-MIR172f | MI0013256 | None | chr5 | 19295951 | 19296068 | - | High |
| sbi-MIR5387b | MI0019104 | None | chr6 | 55683234 | 55683342 | + | Medium |