Stem-loop sbi-MIR169a

Accession

MI0001516

Description

Sorghum bicolor sbi-MIR169a precursor miRNA

Literature search

5 open access papers mention sbi-MIR169a
(24 sentences)

Sequence

11326 reads, 440.0 reads per million, 50 experiments

CAGCCAAGGAUGACUUGCCGaucgaucgaugcaaacuccucugaugucugaucucaucagauuaucguuguCGGCAAGUUGUUCUUGGCUA
.((((((((((((((((((((.(((.(((((........(((((((........))))))).)))))))))))))))))))))))))))).

Structure

C                    u   u     caaacucc       ucu 
 AGCCAAGGAUGACUUGCCGa cga cgaug        ucugaug   g
 |||||||||||||||||||| ||| |||||        |||||||    
 UCGGUUCUUGUUGAACGGCu guu gcuau        agacuac   a
A                    -   -     -------u       ucu 

Annotation confidence High

Genome context

chr3: 10749535-10749625 [+]

Mature sbi-miR169a-5p

• Accession: MIMAT0001410
• Description: Sorghum bicolor sbi-miR169a-5p mature miRNA
• Sequence: 1 - CAGCCAAGGAUGACUUGCCG - 20
• Evidence: not_experimental

Mature sbi-miR169a-3p

• Accession: MIMAT0056350
• Description: Sorghum bicolor sbi-miR169a-3p mature miRNA
• Sequence: 72 - CGGCAAGUUGUUCUUGGCUA - 91
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13