Stem-loop zma-MIR395d

Accession

MI0013212

Description

Zea mays zma-MIR395d precursor miRNA

Literature search

18 open access papers mention zma-MIR395d
(85 sentences)

Sequence

2 reads, 6 reads per million, 2 experiments

aGUUCUAUGCAAGCACUUCACGAggcauuguuucaagagcuuuuGUGAAGUGUUUGGGGGAACUCu
((((((.(.(((((((((((((((((.((......)).)).))))))))))))))).)))))))..

Structure

--      A G               -  a  gu 
  aGUUCU U CAAGCACUUCACGAg gc uu  u
  |||||| | ||||||||||||||| || ||   
  UCAAGG G GUUUGUGAAGUGuuu cg ga  u
uC      - G               u  a  ac 

Annotation confidence Not enough data

Genome context

chr2: 6276291-6276356 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from zma-MIR395d

Mature zma-miR395d-5p

• Accession: MIMAT0015336
• Description: Zea mays zma-miR395d-5p mature miRNA
• Sequence: 2 - GUUCUAUGCAAGCACUUCACGA - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395d-3p

• Accession: MIMAT0014001
• Description: Zea mays zma-miR395d-3p mature miRNA
• Sequence: 45 - GUGAAGUGUUUGGGGGAACUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716