Stem-loop zma-MIR169k

Accession

MI0001831

Description

Zea mays zma-MIR169k precursor miRNA

Literature search

32 open access papers mention zma-MIR169k
(216 sentences)

Sequence

5959 reads, 10387.0 reads per million, 113 experiments

cgaugagagcacugcuCUGGUAGCCAAGGAUGACUUGCCUGuggccuccaucagucgcagaggacgcuguucuucugcuugugguugucgauCGCAGGCAGUCUCCUUGGCUAGcccgagcggcucucaucca
.(((((((((.(.((((.((((((((((((.((((.(((((((((..(.((((...((((((((......))))))))...)))).)..).))))))))))))))))))))).))).))))))))))))))..

Structure

-c         a u    U   -         U    U        - cu c    guc        cg 
  gaugagagc c gcuC GGU AGCCAAGGA GACU GCCUGugg c  c auca   gcagagga  c
  ||||||||| | |||| ||| ||||||||| |||| |||||||| |  | ||||   ||||||||   
  cuacucucg g cgag ccG UCGGUUCCU CUGA CGGACGCu g  g uggu   cgucuucu  u
ac         - -    c   A         -    -        a cu u    guu        ug 

Annotation confidence Medium

Genome context

7: 143533494-143533626 [+]

Mature zma-miR169k-5p

• Accession: MIMAT0001733
• Description: Zea mays zma-miR169k-5p mature miRNA
• Sequence: 17 - CUGGUAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169k-3p

• Accession: MIMAT0015196
• Description: Zea mays zma-miR169k-3p mature miRNA
• Sequence: 93 - CGCAGGCAGUCUCCUUGGCUAG - 114
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13