Stem-loop sbi-MIR160e

Accession

MI0001511

Description

Sorghum bicolor sbi-MIR160e precursor miRNA

Literature search

3 open access papers mention sbi-MIR160e
(11 sentences)

Sequence

199826 reads, 12072.0 reads per million, 50 experiments

UGCCUGGCUCCCUGUAUGCCAcucgcacggcuaccaccccaagaucaucgaucgaucucgguggccgcugcggcugGCGUGCGAGGUGCCAAGCA
(((.((((.((.(((((((((.(((((((((((((.......((((...))))......)))))))).))))).))))))))).)).)))).)))

Structure

   C    U  C         c     -        accccaa    a 
UGC UGGC CC UGUAUGCCA ucgca cggcuacc       gauc  
||| |||| || ||||||||| ||||| ||||||||       |||| u
ACG ACCG GG GCGUGCGgu ggcgu gccggugg       cuag  
   A    U  A         c     c        -cucuag    c 

Annotation confidence High

Genome context

chr2: 2883714-2883808 [-]

Mature sbi-miR160e-5p

• Accession: MIMAT0001405
• Description: Sorghum bicolor sbi-miR160e-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: not_experimental

Mature sbi-miR160e-3p

• Accession: MIMAT0056345
• Description: Sorghum bicolor sbi-miR160e-3p mature miRNA
• Sequence: 77 - GCGUGCGAGGUGCCAAGCA - 95
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13