Stem-loop sbi-MIR5382

Accession

MI0018689

Description

Sorghum bicolor sbi-MIR5382 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5382
(1 sentences)

Sequence

5159 reads, 159.0 reads per million, 49 experiments

uuuucauugCCAAUCUAAACAGGCCCUaacucaucaguggacauuuugcaagaggagaaagccgaaagccucuuuugagcugggaccuguUUAGAUUGGGAACGAAAAcg
(((((.((.((((((((((((((.((((.((((..((.((.(.(((.((...........)).))).))).))..)))).)))).)))))))))))))).)).)))))..

Structure

--     a  g              C    a    uc  u  a a   u  aaga 
  uuuuc uu CCAAUCUAAACAGG CCUa cuca  ag gg c uuu gc    g
  ||||| || |||||||||||||| |||| ||||  || || | ||| ||    g
  AAAAG AA GGUUAGAUUugucc gggu gagu  uc cc g aag cg    a
gc     C  G              a    c    uu  u  - a   c  aaag 

Annotation confidence Low

Genome context

chr2: 1896458-1896567 [+]

Mature sbi-miR5382-5p

• Accession: MIMAT0021680
• Description: Sorghum bicolor sbi-miR5382-5p mature miRNA
• Sequence: 10 - CCAAUCUAAACAGGCCCU - 27
• Evidence: experimental ; SOLiD [1]

Mature sbi-miR5382-3p

• Accession: MIMAT0056454
• Description: Sorghum bicolor sbi-miR5382-3p mature miRNA
• Sequence: 91 - UUAGAUUGGGAACGAAAA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356