Stem-loop sbi-MIR395a

Accession

MI0001534

Description

Sorghum bicolor sbi-MIR395a precursor miRNA

Literature search

4 open access papers mention sbi-MIR395a
(31 sentences)

Sequence

21729 reads, 928.0 reads per million, 48 experiments

gguugguugguugucaccuggaGUUCUCCACAAACUACUUCAGUagcaacacacaccccuaguuuaaugcaccguguuugcauguuuguguggagcuguguguguacauaGUGAAGUGUUUGGGGGAACUCuggguggcaaucagcaauu
.....((((((((((((((((((((((((.(((((.((((((.((...((((((((....(((((.(((((.((((....))))..))))).)))))))))))))...)).)))))))))))))))))))))))))))))))))))....

Structure

gguug                        A     U      G  gca        cccu     a     -c    u 
     guugguugucaccuggaGUUCUCC CAAAC ACUUCA Ua   acacacac    aguuu augca  cgug u
     |||||||||||||||||||||||| ||||| |||||| ||   ||||||||    ||||| |||||  ||||  
     cgacuaacgguggguCUCAAGGGG GUUUG UGAAGU au   ugugugug    ucgag ugugu  guac u
-uuaa                        -     -      G  aca        ----     g     uu    g 

Annotation confidence High

Genome context

chr6: 57783551-57783700 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395a

Mature sbi-miR395a-5p

• Accession: MIMAT0056354
• Description: Sorghum bicolor sbi-miR395a-5p mature miRNA
• Sequence: 23 - GUUCUCCACAAACUACUUCAGU - 44
• Evidence: experimental ; unknown

Mature sbi-miR395a-3p

• Accession: MIMAT0001430
• Description: Sorghum bicolor sbi-miR395a-3p mature miRNA
• Sequence: 111 - GUGAAGUGUUUGGGGGAACUC - 131
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13