Stem-loop sbi-MIR160a

Accession

MI0001508

Description

Sorghum bicolor sbi-MIR160a precursor miRNA

Literature search

4 open access papers mention sbi-MIR160a
(15 sentences)

Sequence

202653 reads, 11967.0 reads per million, 50 experiments

UGCCUGGCUCCCUGUAUGCCAcacauguagcccaacccauaugcuaagguugccugcugugggugGCGUGCAAGGGGCCAAGCA
(((.(((((((.((((((((((.(((((((..(((((..........))))).)))).))).)))))))))).))))))).)))

Structure

   C       C          a   -    cc     caua 
UGC UGGCUCC UGUAUGCCAc cau guag  caacc    u
||| ||||||| |||||||||| ||| ||||  |||||     
ACG ACCGGGG ACGUGCGgug gug cguc  guugg    g
   A       A          g   u    -c     aauc 

Annotation confidence High

Genome context

chr4: 4215241-4215324 [-]

Mature sbi-miR160a-5p

• Accession: MIMAT0001402
• Description: Sorghum bicolor sbi-miR160a-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: not_experimental

Mature sbi-miR160a-3p

• Accession: MIMAT0056342
• Description: Sorghum bicolor sbi-miR160a-3p mature miRNA
• Sequence: 66 - GCGUGCAAGGGGCCAAGCA - 84
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13