Stem-loop sbi-MIR5383

Accession

MI0018690

Description

Sorghum bicolor sbi-MIR5383 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5383
(2 sentences)

Sequence

2033 reads, 25.0 reads per million, 27 experiments

uggaccuauuuauaggccggccAUGACAGAGCUCCGGCAGAGAUAUuuuucuccgccgAGCUUAUCUGUGGCGCUAGUUCACUgccaucuggccgagguggucuggcaua
(((.((((....)))))))((((((...((((((.(((.((((......)))).)))))))))...))))))(((((.((((((((....)))...))))).)))))...

Structure

-------------------uggaccuauuuauaggccg      ACA      C   A    UA 
                                      gccAUG   GAGCUC GGC GAGA  U
                                      ||||||   |||||| ||| ||||   
                                      CGGUGU   UUCGAg ccg cucu  u
auacggucugguggagccggucuaccgUCACUUGAUCG      CUA      -   c    uu 

Annotation confidence Low

Genome context

chr4: 43795826-43795935 [+]

Mature sbi-miR5383-5p

• Accession: MIMAT0021681
• Description: Sorghum bicolor sbi-miR5383-5p mature miRNA
• Sequence: 23 - AUGACAGAGCUCCGGCAGAGAUAU - 46
• Evidence: experimental ; SOLiD [1]

Mature sbi-miR5383-3p

• Accession: MIMAT0056455
• Description: Sorghum bicolor sbi-miR5383-3p mature miRNA
• Sequence: 59 - AGCUUAUCUGUGGCGCUAGUUCACU - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356