Stem-loop zma-MIR395f

Accession

MI0013214

Description

Zea mays zma-MIR395f precursor miRNA

Literature search

18 open access papers mention zma-MIR395f
(88 sentences)

Sequence

2 reads, 6 reads per million, 2 experiments

aGUUACCUACAAGCACGUCUCGAuaccuuggcuuaauaaaggccaguuGUGAAGUGUUUGGGGGAACUCu
((((.(((.(((((((.((.((((....((((((.....)))))))))).)).))))))).)))))))..

Structure

--    A   A       G  U    accu      a 
  aGUU CCU CAAGCAC UC CGAu    uggcuu a
  |||| ||| ||||||| || ||||    |||||| u
  UCAA GGG GUUUGUG AG Guug    accgga a
uC    -   G       A  U    ----      a 

Annotation confidence Low

Genome context

chr2: 6276947-6277016 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from zma-MIR395f

Mature zma-miR395f-5p

• Accession: MIMAT0015338
• Description: Zea mays zma-miR395f-5p mature miRNA
• Sequence: 2 - GUUACCUACAAGCACGUCUCGA - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395f-3p

• Accession: MIMAT0014003
• Description: Zea mays zma-miR395f-3p mature miRNA
• Sequence: 49 - GUGAAGUGUUUGGGGGAACUC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716