Stem-loop sbi-MIR395h

Accession

MI0010892

Description

Sorghum bicolor sbi-MIR395h precursor miRNA

Literature search

4 open access papers mention sbi-MIR395h
(31 sentences)

Sequence

9435 reads, 408.0 reads per million, 49 experiments

GUUCCCUUCAAGCACUUCACAUGaggcaccauucaaacucuguuuaagauuagguguaauGUGAAGUGUUUGGGGGAACUC
(((((((.((((((((((((((...((((((.((((((...))))..)).).))))).)))))))))))))))))))))..

Structure

--       U              Gag     - u  --    u 
  GUUCCCU CAAGCACUUCACAU   gcacc a uc  aaac  
  ||||||| ||||||||||||||   ||||| | ||  |||| c
  CAAGGGG GUUUGUGAAGUGua   ugugg u ag  uuug  
CU       -              --a     a u  aa    u 

Annotation confidence High

Genome context

chr6: 57784485-57784565 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395h

Mature sbi-miR395h-5p

• Accession: MIMAT0056421
• Description: Sorghum bicolor sbi-miR395h-5p mature miRNA
• Sequence: 1 - GUUCCCUUCAAGCACUUCACAUG - 23
• Evidence: experimental ; unknown

Mature sbi-miR395h-3p

• Accession: MIMAT0011352
• Description: Sorghum bicolor sbi-miR395h-3p mature miRNA
• Sequence: 61 - GUGAAGUGUUUGGGGGAACUC - 81
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556