Stem-loop sbi-MIR395i

Accession

MI0010893

Description

Sorghum bicolor sbi-MIR395i precursor miRNA

Literature search

4 open access papers mention sbi-MIR395i
(31 sentences)

Sequence

8338 reads, 383.0 reads per million, 47 experiments

GUUCCCUGCAAACACUUCACAagcuagaccauauauaguaugcccuugcacaaugugguauccaguuaccuagcuaGUGAAGUGUUUGGGGGAACUC
(((((((.((((((((((((.(((((((((((((...(((......)))...)))))))..........)))))).)))))))))))))))))))..

Structure

--       G            A      ----------       aua   ug 
  GUUCCCU CAAACACUUCAC agcuag          accauau   gua  c
  ||||||| |||||||||||| ||||||          |||||||   |||   
  CAAGGGG GUUUGUGAAGUG ucgauc          uggugua   cgu  c
CU       -            a      cauugaccua       aca   uc 

Annotation confidence High

Genome context

chr7: 4623362-4623458 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395i

Mature sbi-miR395i-5p

• Accession: MIMAT0056422
• Description: Sorghum bicolor sbi-miR395i-5p mature miRNA
• Sequence: 1 - GUUCCCUGCAAACACUUCACA - 21
• Evidence: experimental ; unknown

Mature sbi-miR395i-3p

• Accession: MIMAT0011353
• Description: Sorghum bicolor sbi-miR395i-3p mature miRNA
• Sequence: 77 - GUGAAGUGUUUGGGGGAACUC - 97
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556