Stem-loop sbi-MIR5387a

Accession

MI0018694

Description

Sorghum bicolor sbi-MIR5387a precursor miRNA

Literature search

1 open access papers mention sbi-MIR5387a
(1 sentences)

Sequence

4917 reads, 217.0 reads per million, 50 experiments

ucgUAACACGAACCGGUGCUAAAGGAUCuugcccaacggcuacugacagcuguuguuggggcagggaCCCUUUAGCACCGGUUCGUGUUacaaaccggugguaaaggguu
..(((((((((((((((((((((((.(((((((((((((((......)))))))....))))))))..))))))))))))))))))))))).((((..........))))

Structure

-----------------uc                       -A        ----       ac 
                   gUAACACGAACCGGUGCUAAAGG  UCuugccc    aacggcu  u
                   |||||||||||||||||||||||  ||||||||    |||||||   
                   caUUGUGCUUGGCCACGAUUUCC  gggacggg    uugucga  g
uugggaaaugguggccaaa                       Ca        guug       ca 

Annotation confidence Low

Genome context

chr7: 17116510-17116619 [+]

Mature sbi-miR5387a-5p

• Accession: MIMAT0021685
• Description: Sorghum bicolor sbi-miR5387a-5p mature miRNA
• Sequence: 4 - UAACACGAACCGGUGCUAAAGGAUC - 28
• Evidence: experimental ; SOLiD [1]

Mature sbi-miR5387a-3p

• Accession: MIMAT0056457
• Description: Sorghum bicolor sbi-miR5387a-3p mature miRNA
• Sequence: 68 - CCCUUUAGCACCGGUUCGUGUU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356