Stem-loop sbi-MIR169k

Accession

MI0010876

Description

Sorghum bicolor sbi-MIR169k precursor miRNA

Literature search

5 open access papers mention sbi-MIR169k
(27 sentences)

Sequence

25241 reads, 551.0 reads per million, 50 experiments

CAGCCAAGGAUGACUUGCCGGcuccucaaauuugaagcgucgucuaagcugcugaggcuuaauaaaaacuuagucGGCAAGUCUGUCCUUGGCUACA
.((((((((((((((((((((((...........((((.(((.(......).))).))))...........)))))))))))).))))))))))...

Structure

--C          -            ccucaaauuug    g   u ua 
   AGCCAAGGAU GACUUGCCGGcu           aagc ucg c  a
   |||||||||| ||||||||||||           |||| ||| |   
   UCGGUUCCUG CUGAACGGcuga           uucg agu g  g
ACA          U            uucaaaaauaa    g   c uc 

Annotation confidence High

Genome context

chr6: 55762145-55762241 [-]

Mature sbi-miR169k-5p

• Accession: MIMAT0011336
• Description: Sorghum bicolor sbi-miR169k-5p mature miRNA
• Sequence: 1 - CAGCCAAGGAUGACUUGCCGG - 21
• Evidence: not_experimental

Mature sbi-miR169k-3p

• Accession: MIMAT0056407
• Description: Sorghum bicolor sbi-miR169k-3p mature miRNA
• Sequence: 76 - GGCAAGUCUGUCCUUGGCUACA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556