Stem-loop sbi-MIR169i

Accession

MI0001563

Description

Sorghum bicolor sbi-MIR169i precursor miRNA

Literature search

5 open access papers mention sbi-MIR169i
(24 sentences)

Sequence

9309 reads, 168.0 reads per million, 48 experiments

gauggagagcccccuuuugCUAGCCAAGAAUGACUUGCCUAUGcaugcccucuguuggcaauuccuccagccauggagauugcacaaggugaauuuuugcggcauagaugauggaugcaauguggcugcaUGGGCAGGUCUUCUUGGCUAGCcagagugcucucaucca
((((.(((((...((((.((((((((((((.((((((((((((((.(((.(((.((((((((..(((((....)))))))))).))).).))....(((((.(((.....)))..)))))...))))))))))))))))))))))))))))).)))).)))))))))..

Structure

--    g     ccc    u            U              u   ------------------------------c  - g   -     uc     g 
  gaug agagc   cuuu gCUAGCCAAGAA GACUUGCCUAUGca gcc                               uc u uug gcaau  cucca c
  |||| |||||   |||| |||||||||||| |||||||||||||| |||                               || | ||| |||||  |||||  
  cuac ucucg   gaga CGAUCGGUUCUU CUGGACGGGUacgu cgg                               ag g aac cguua  gaggu c
ac    -     --u    c            -              -   uguaacguagguaguagauacggcguuuuua  u g   a     --     a 

Annotation confidence Medium

Genome context

chr5: 16922857-16923025 [+]

Mature sbi-miR169i-5p

• Accession: MIMAT0001459
• Description: Sorghum bicolor sbi-miR169i-5p mature miRNA
• Sequence: 20 - CUAGCCAAGAAUGACUUGCCUAUG - 43
• Evidence: not_experimental

Mature sbi-miR169i-3p

• Accession: MIMAT0056378
• Description: Sorghum bicolor sbi-miR169i-3p mature miRNA
• Sequence: 131 - UGGGCAGGUCUUCUUGGCUAGC - 152
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13