Stem-loop zma-MIR164b

Accession

MI0001471

Description

Zea mays zma-MIR164b precursor miRNA

Literature search

29 open access papers mention zma-MIR164b
(230 sentences)

Sequence

1586 reads, 3176 reads per million, 4 experiments

uagacgguggcugugcguggUGGAGAAGCAGGGCACGUGCAuuaccauccaaugccgccggguggguggguggaauggauggaugguucuugAUGUGCCCAUCUUCUCCACCgagcacgaacugucuu
.(((((((...(((((.(((((((((((..((((((((.....((((((((...(((((.(.....).)))))......)))))))).....))))))))..))))))))))).))))).))))))).

Structure

u       ggc     g           CA        GCAuu        ---aug     g g 
 agacggu   ugugc uggUGGAGAAG  GGGCACGU     accaucca      ccgcc g u
 |||||||   ||||| |||||||||||  ||||||||     ||||||||      ||||| | g
 ucuguca   gcacg gCCACCUCUUC  CCCGUGUA     ugguaggu      ggugg u g
u       --a     a           UA        guucu        agguaa     g g 

Annotation confidence Not enough data

Genome context

chr6: 145727415-145727542 [+]

Mature zma-miR164b-5p

• Accession: MIMAT0001366
• Description: Zea mays zma-miR164b-5p mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR164b-3p

• Accession: MIMAT0015138
• Description: Zea mays zma-miR164b-3p mature miRNA
• Sequence: 93 - AUGUGCCCAUCUUCUCCACC - 112
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716