Stem-loop sbi-MIR5387b

Accession

MI0019104

Description

Sorghum bicolor sbi-MIR5387b precursor miRNA

Literature search

1 open access papers mention sbi-MIR5387b
(1 sentences)

Sequence

4111 reads, 188.0 reads per million, 50 experiments

cggcacguggcucugACCGGUGCUAAAGGGUCUCUGCCCcaacaacaccugucaguagccguggggcaggauccuuuagcaccgguucguguuacgaaccgguguuaaa
(((..((((((.(.((((((((((((((((((.((((((((.....((......)).....)))))))))))))))))))))))))).).))))))..)))........

Structure

--------   ca      u u                  U        acaac  cu 
        cgg  cguggc c gACCGGUGCUAAAGGGUC CUGCCCca     ac  g
        |||  |||||| | |||||||||||||||||| ||||||||     ||   
        gcc  gcauug g uuggccacgauuuccuag gacggggu     ug  u
aaauugug   aa      u c                  -        gccga  ac 

Annotation confidence Medium

Genome context

chr6: 55683234-55683342 [+]

Mature sbi-miR5387b-5p

• Accession: MIMAT0056467
• Description: Sorghum bicolor sbi-miR5387b-5p mature miRNA
• Sequence: 16 - ACCGGUGCUAAAGGGUCUCUGCCC - 39
• Evidence: experimental ; unknown

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468